Convert File to Text to Chunks to Embeddings Within Oracle Database

First convert a PDF file to text, split the text into chunks, and then create vector embeddings on each chunk by accessing a vector embedding model stored in the database.

You can run parallel or step-by-step transformations like this for standalone applications where you want to review, inspect, and accordingly amend results at each stage and then proceed further.

Here, you use a set of functions from the DBMS_VECTOR_CHAIN package, such as UTL_TO_TEXT, UTL_TO_CHUNKS, and UTL_TO_EMBEDDINGS.

To generate embeddings using a vector embedding model stored in the database, through step-by-step transformation chains:

Connect as a local user and prepare your data dump directory.

conn sys/password as sysdba

CREATE TABLESPACE tbs1
DATAFILE 'tbs5.dbf' SIZE 20G AUTOEXTEND ON
EXTENT MANAGEMENT LOCAL
SEGMENT SPACE MANAGEMENT AUTO;

SET ECHO ON
SET FEEDBACK 1
SET NUMWIDTH 10
SET LINESIZE 80
SET TRIMSPOOL ON
SET TAB OFF
SET PAGESIZE 10000
SET LONG 10000

Create a local user (docuser) and grant necessary privileges:

drop user docuser cascade;

create user docuser identified by docuser DEFAULT TABLESPACE tbs1 quota unlimited on tbs1;

grant DB_DEVELOPER_ROLE to docuser;

Create a local directory (VEC_DUMP) to store your input data and model files. Grant necessary privileges:

create or replace directory VEC_DUMP as '/my_local_dir/';

grant read, write on directory VEC_DUMP to docuser;

commit;

Connect as the local user (docuser):
```
conn docuser/password
```

Convert file to text.

Create a relational table (documentation_tab) and store your PDF document (Oracle Database Concepts) in it:

drop table documentation_tab purge;

CREATE TABLE documentation_tab (id number, data blob);

INSERT INTO documentation_tab values(1, to_blob(bfilename('VEC_DUMP', 'database-concepts23ai.pdf')));

commit;

SELECT dbms_lob.getlength(t.data) from documentation_tab t;

Call UTL_TO_TEXT to convert the PDF document into text format:

SELECT dbms_vector_chain.utl_to_text(dt.data) from documentation_tab dt;

An excerpt from the output is as follows:

DBMS_VECTOR_CHAIN.UTL_TO_TEXT(DT.DATA)
--------------------------------------------------------------------------
Database Concepts
23ai
Oracle Database Database Concepts, 23ai

This software and related documentation are provided under a license agreement containing restrictions on 
use and disclosure and are protected by intellectual property laws. Except as expressly permitted in your
license agreement or allowed by law, you may not use, copy, reproduce, translate
, broadcast, modify, license, transmit, distribute, exhibit, perform, publish, or display any part, in any for
m, or by any means. Reverse engineering, disassembly, or decompilation of this software, unless required by
law for interoperability, is prohibited.

Contents

Preface
Audience
xxiii
Documentation Accessibility
xxiii
Related Documentation
xxiv
Conventions
xxiv
1
Introduction to Oracle Database
About Relational Databases
1-1
Database Management System (DBMS)
1-2
Relational Model
1-2
Relational Database Management System (RDBMS)
1-3
Brief History of Oracle Database
1-3
Schema Objects
1-5
Tables
1-5
Indexes
1-6
Data Access

1 row selected.

Convert text to chunks.

Call UTL_TO_CHUNKS to chunk the text document:

Here, you create the chunks using the default chunking parameters.

SELECT ct.* 
  from documentation_tab dt, 
  dbms_vector_chain.utl_to_chunks(dbms_vector_chain.utl_to_text(dt.data)) ct;

An excerpt from the output is as follows:

{"chunk_id":1,"chunk_offset":1508024,"chunk_length":579,"chunk_data":"Inventory 
\n\n\n\nAnalysis \n\n\n\nReporting \n\n\n\nMining\n\n\n\nSummary \n\n\n\nData
 \n\n\n\nRaw Data\n\n\n\nMetadata\n\n\n\nSee Also:\n\n\n\nOracle Database Data 
Warehousing Guide to learn about transformation \n\n\n\nmechanisms\n\n\n\nOvervie
w of Extraction, Transformation, and Loading (ETL) \n\n\n\nThe process of extrac
ting data from source systems and bringing it into the warehouse is \n\n\n\ncomm
only called ETL: extraction, transformation, and loading. ETL refers to a broad
process \n\n\n\nrather than three well-defined steps.\n\n\n\nIn a typical scenar
io, data from one or more operational systems is extracted and then"}

{"chunk_id":2,"chunk_offset":1508603,"chunk_length":607,"chunk_data":"physica
lly transported to the target system or an intermediate system for processing. \
n\n\n\nDepending on the method of transportation, some transformations can occur
 during this \n\n\n\nprocess. For example, a SQL statement that directly accesse
s a remote target through a \n\n\n\ngateway can concatenate two columns as part
of the \n\n\n\nSELECT\n\n\n\nstatement. \n\n\n\nOracle Database is not itself an
 ETL tool. However, Oracle Database provides a rich set of \n\n\n\ncapabilities
usable by ETL tools and customized ETL solutions. ETL capabilities provided by \
n\n\n\nOracle Database include:\n\n\n\n? \n\n\n\nTransportable tablespaces"}

3728 rows selected.

Notice the extra spaces and newline characters (\n\n) in the chunked output. This is because normalization is not applied by default. As shown in the next step, you can apply custom chunking specifications, such as normalize to omit duplicate characters, extra spaces, or newline characters from the output. You can further refine your chunks by applying other chunking specifications, such as split conditions or maximum size limits.

Apply the following JSON parameters to use normalization and some of the custom chunking specifications (described in Explore Chunking Techniques and Examples):

SELECT ct.* 
  from documentation_tab dt, 
  dbms_vector_chain.utl_to_chunks(dbms_vector_chain.utl_to_text(
    dt.data),   
    JSON('{
           "by" : "words",
           "max" : "100",
           "overlap" : "0",
           "split" : "recursively",
           "language" : "american",
           "normalize" : "all"
          }')) ct;

The output may now appear as:

{"chunk_id":2536,"chunk_offset":1372527,"chunk_length":633,"chunk_data":"The dat
abase maps granules to parallel execution servers at execution time. When a para
llel execution server finishes reading the rows corresponding to a granule, and 
when granules remain, it obtains another granule from the query coordinator. This
operation continues until the table has been read. The execution servers send 
results back to the coordinator, which assembles the pieces into the desired full
table scan. Oracle Database VLDB and Partitioning Guide to learn how to use 
parallel execution. Oracle Database Data Warehousing Guide to learn about 
recommended"}

{"chunk_id":2537,"chunk_offset":1373160,"chunk_length":701,"chunk_data":"initial
ization parameters for parallelism\n\nChapter 18\n\nOverview of Background Proce
sses\n\nApplication and Oracle Net Services Architecture\n\nThis chapter defines
application architecture and describes how an Oracle database and database appli
cations work in a distributed processing environment. This material applies to 
almost every type of Oracle Database environment. Overview of Oracle Application
Architecture In the context of this chapter, application architecture refers to 
the computing environment in which a database application connects to an Oracle
database."}

3728 rows selected.

The chunking results contain:

chunk_id: Chunk ID for each chunk
chunk_offset: Original position of each chunk in the source document, relative to the start of document (which has a position of 1)
chunk_length: Character length of each chunk
chunk_data: Text pieces from each chunk

Convert chunks to embeddings.

Load your embedding model into Oracle Database by calling the load_onnx_model procedure.
```
EXECUTE dbms_vector.drop_onnx_model(model_name => 'doc_model', force => true);
```
```
EXECUTE dbms_vector.load_onnx_model('VEC_DUMP', 'my_embedding_model.onnx', 'doc_model', JSON('{"function" : "embedding", "embeddingOutput" : "embedding" , "input": {"input": ["DATA"]}}'));
```
In this example, the procedure loads an ONNX model file, named my_embedding_model.onnx from the VEC_DUMP directory, into the database as doc_model. You must replace my_embedding_model.onnx with an ONNX export of your embedding model and doc_model with the name under which the imported model is stored in the database.

Note:
If you do not have an embedding model in ONNX format, then perform the steps listed in ONNX Pipeline Models : Text Embedding.

Call UTL_TO_EMBEDDINGS to generate a set of vector embeddings corresponding to the chunks:

var embed_params clob;
exec :embed_params := '{"provider":"database", "model":"doc_model"}';

SELECT et.* from 
  documentation_tab dt,
  dbms_vector_chain.utl_to_embeddings(
    dbms_vector_chain.utl_to_chunks(dbms_vector_chain.utl_to_text(dt.data)),
    json(:embed_params)) et;

An excerpt from the output is as follows:

{"embed_id":"1","embed_data":"Introduction to Oracle Database\n\n\nThis
chapter provides an overview of Oracle Database. Every organization has informat
ion that it must store and manage to meet its requirements. For example, a corpo
ration must collect and maintain human resources records for its employees. About
Relational Databases and Schema Objects\n\n\nData Access tables with parent keys,
base, upgrade, UROWID data type, user global area (UGA), user program interface,
","embed_vector":"[0.111119926,0.0423980951,-0.00929224491,-0.0352411047,-0.0144
591287,0.0277361721,0.183199733,-0.0245029964,-0.137614027,0.0730137378,0.017934
6036,0.0788726509,0.0176453814,0.100403085,-0.0518687107,-0.0152645027,0.0283792
187,-0.114087239,0.0139923804,0.0747490972,-0.181839675,-0.130034953,0.101207718
,0.117135495,-0.0682030097,-0.217743069,0.0613380745,0.0150767341,0.0361393057,-
0.113082513,-0.0550440662,-0.000983044971,-0.00719357422,0.1590323,-0.0220414512
,-0.0723528489,-0.0126240514,-0.175765082,0.168952227,0.0466451086,-0.12136507,-
0.0442310236,0.0139067639,0.054659389,-0.29653421,-0.0988782048,0.0794349238,-0.
0758788213,0.0152856084,-0.0260562375,0.0652966872,-0.0782724097,-0.0226081386,0
.0909011662,-0.184569761,0.159565002,-0.15350005,-0.0108382348,0.101788878,1.919
59683E-002,2.54665539E-002,2.50248201E-002,5.29858321E-002,1.42359538E-002,5.655
82886E-002,3.41602638E-002,3.18607911E-002,-3.07250433E-002,-3.60006578E-002,-3.
26940455E-002,-5.13980947E-002,-9.18597169E-003,-2.40122043E-002,2.15246622E-002
,-3.89301814E-002,1.09825116E-002,-8.59739035E-002,-3.34327705E-002,-6.52310252E
-002,2.46418975E-002,6.27725571E-003,6.54156879E-002,-2.97986511E-003,-1.485541E
-003,-9.00155635E-003]"}

{"embed_id":2,"embed_data":"1-18 Database, 19-6 write-ahead,18-17 Learn session 
memory in a large pool. The multitenant architecture enables an Oracle database 
to function as a multitenant container database (CDB). XStream,20-38\nZero Data 
Loss Recovery Appliance See Recovery Appliance zone maps, An application contai
ner consists of exactly one application root, and PDBs plugged in to this root.
Index-21\n D:20231208125114-08'00' D:20231208125114-08'00' D:20231208125114-08'0
0' 19-6","embed_vector":"[6.30229115E-002,6.80943206E-002,-6.94655553E-002,-2.58
157589E-002,-1.89648587E-002,-9.02655348E-002,1.97774544E-002,-9.39233322E-003,-
5.06882742E-002,2.0078931E-002,-1.28898735E-003,-4.10606936E-002,2.09831214E-003
,-4.53372523E-002,-7.09890276E-002,5.38906306E-002,-5.81014939E-002,-1.3959175E-
004,-1.08725717E-002,-3.79145369E-002,-4.39973129E-003,3.25602405E-002,6.5887302
2E-002,-4.27212603E-002,-3.00925318E-002,3.07144262E-002,-2.26370787E-004,-4.623
15865E-002,1.11807801E-001,7.36674219E-002,-1.61244173E-003,7.35205635E-002,4.16
726843E-002,-5.08309156E-002,-3.55720241E-003,4.49763797E-003,5.03803678E-002,2.
32542045E-002,-2.58533042E-002,9.06257033E-002,8.49585086E-002,8.65213498E-002,5
.84013164E-002,-7.72946924E-002,6.65430725E-002,-1.64568517E-002,3.23978886E-002
,2.24988302E-003,3.02566844E-003,-2.43405364E-002,9.75424573E-002,4.14630538E-00
3,1.89351812E-002,-1.10467218E-001,-1.24333188E-001,-2.36738548E-002,7.54277706E
-002,-1.64660662E-002,-1.38906585E-002,3.42438952E-003,-1.88432514E-005,-2.47511
379E-002,-3.42802797E-003,3.23110656E-003,4.24311385E-002,6.59448802E-002,-3.311
67318E-002,-5.14010936E-002,2.38897409E-002,-9.00154635E-002]"}

3728 rows selected.

The embedding results contain:

embed_id: ID number of each vector embedding
embed_data: Input text that is transformed into embeddings
embed_vector: Generated vector representations

Related Topics

Parent topic: Perform Chunking With Embedding